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BrainOmni: A Brain Foundation Model for Unified EEG and MEG Signals

Neural Information Processing Systems

Electroencephalography (EEG) and magnetoencephalography (MEG) measure neural activity non-invasively by capturing electromagnetic fields generated by dendritic currents. Although rooted in the same biophysics, EEG and MEG exhibit distinct signal patterns, further complicated by variations in sensor configurations across modalities and recording devices. Existing approaches typically rely on separate, modality-and dataset-specific models, which limits the performance and cross-domain scalability. This paper proposes BrainOmni, the first brain foundation model that generalises across heterogeneous EEG and MEG recordings. To unify diverse data sources, we introduce BrainTokenizer, the first tokeniser that quantises spatiotemporal brain activity into discrete representations.





Figure 9: In experiments, we used a common feature-extractor (F

Neural Information Processing Systems

Here, we include implementation details omitted from the main paper for brevity. Upon acceptance, a deanonymized repository will be released. The last layer's dimension depended upon the exact The feature extractors and decoders varied by domain. In particular, we found that if we did not apply this linear transformation (i.e., pass the raw encodings For VQ-based methods, use a large enough codebook to have at least one element per class. Other differences simply reflected differences in architecture (e.g., For iNat, we trained all models with batch size 256, using the hyperparameters specified in Table 3.




Unbiased learning of deep generative models with structured discrete representations

Neural Information Processing Systems

By composing graphical models with deep learning architectures, we learn generative models with the strengths of both frameworks. The structured variational autoencoder (SVAE) inherits structure and interpretability from graphical models, and flexible likelihoods for high-dimensional data from deep learning, but poses substantial optimization challenges. We propose novel algorithms for learning SVAEs, and are the first to demonstrate the SVAE's ability to handle multimodal uncertainty when data is missing by incorporating discrete latent variables. Our memory-efficient implicit differentiation scheme makes the SVAE tractable to learn via gradient descent, while demonstrating robustness to incomplete optimization. To more rapidly learn accurate graphical model parameters, we derive a method for computing natural gradients without manual derivations, which avoids biases found in prior work. These optimization innovations enable the first comparisons of the SVAE to state-of-the-art time series models, where the SVAE performs competitively while learning interpretable and structured discrete data representations.


Human-Guided Complexity-Controlled Abstractions

Neural Information Processing Systems

Neural networks often learn task-specific latent representations that fail to generalize to novel settings or tasks. Conversely, humans learn discrete representations (i.e., concepts or words) at a variety of abstraction levels (e.g., bird vs. sparrow') and use the appropriate abstraction based on tasks. Inspired by this, we train neural models to generate a spectrum of discrete representations, and control the complexity of the representations (roughly, how many bits are allocated for encoding inputs) by tuning the entropy of the distribution over representations. In finetuning experiments, using only a small number of labeled examples for a new task, we show that (1) tuning the representation to a task-appropriate complexity level supports the greatest finetuning performance, and (2) in a human-participant study, users were able to identify the appropriate complexity level for a downstream task via visualizations of discrete representations. Our results indicate a promising direction for rapid model finetuning by leveraging human insight.


Offline RL with Discrete Proxy Representations for Generalizability in POMDPs

Neural Information Processing Systems

Offline Reinforcement Learning (RL) has demonstrated promising results in various applications by learning policies from previously collected datasets, reducing the need for online exploration and interactions. However, real-world scenarios usually involve partial observability, which brings crucial challenges of the deployment of offline RL methods: i) the policy trained on data with full observability is not robust against the masked observations during execution, and ii) the information of which parts of observations are masked is usually unknown during training. In order to address these challenges, we present Offline RL with DiscrEte pRoxy representations (ORDER), a probabilistic framework which leverages novel state representations to improve the robustness against diverse masked observabilities. Specifically, we propose a discrete representation of the states and use a proxy representation to recover the states from masked partial observable trajectories. The training of ORDER can be compactly described as the following three steps.